FICHA · AUR

iqtree

Efficient phylogenomic software by maximum likelihood https://doi.org/10.1093/molbev/msaa015

  • phylogenomic-analysis-tool
  • CLI
  • TERMINAL
  • SCIENCE
  • Launchable
  • Runs in terminal
official+codex · reviewed · Jun 1, 2026 description in en

Description

Large phylogenetic trees can be inferred from sequence data using maximum-likelihood methods.

It is useful for researchers comparing genomes, genes, or evolutionary relationships at scale. Scientific conclusions depend on model choice, input alignment, and statistical interpretation, so document parameters carefully.

How to run

iqtree

Commands: iqtree

Permissions

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