FICHA · AUR

smoldyn

Particle-based biochemical simulator for modeling molecular diffusion, surface interactions, and chemical reactions.

  • biochemical simulator
  • CLI
  • SCIENCE
  • Launchable
  • Runs in terminal
official+codex · reviewed · Jun 4, 2026 description in en

Description

Particle-based biochemical systems can be modeled for molecular diffusion, surface interactions, and chemical reactions. This package is useful for researchers and students running Smoldyn simulations locally. Scientific models depend on assumptions and parameters and should not be treated as clinical proof.

How to run

smoldyn

Commands: smoldyn

Permissions

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