FICHA · AUR

gmap-gsnap

A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and Genomic Short-read Nucleotide Alignment Program

  • cli-tool
  • CLI
  • Launchable
  • Runs in terminal
official+codex · reviewed · May 31, 2026 description in en

Description

Genomic sequences can be mapped and aligned for mRNA, EST and short-read nucleotide analysis. It is useful in bioinformatics workflows that compare sequencing reads or transcript evidence against reference genomes.

Use it with appropriate biological datasets and parameters. Results require domain knowledge, quality control and reproducible analysis records before being used for scientific conclusions.

How to run

gmap

Commands: gmap

Permissions

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